PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0016600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 308aa    MW: 32465.6 Da    PI: 7.1533
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0016600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260994.6e-314106198
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql
  ORGLA01G0016600.1   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQL 95 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallk 98 
                        +q+++e +l++
  ORGLA01G0016600.1  96 CQSAVESVLRG 106
                        ****9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381556.4E-1191305IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.5773109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP  120
PLPTCDIRHV GARRGDVHGA AAGPVADLHR LDISSRAKFK RPGGAAAAAH RSDHAAFELV  180
FSKPAAAMAV DVIRQAQPLN WAPGALSHES ASHDAAPPES EGHSNDTADT VDGSHVSQSE  240
PEPRATSAAT EVHDAGLDLT LGLPPPPPLP VQKTEPADSD GGSQQQHDHR KEKPVELGLA  300
ISTSVAAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644470.10.0PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8863e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1NJX60.0I1NJX6_ORYGL; Uncharacterized protein
STRINGORGLA01G0016600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.14e-69LOB domain-containing protein 40